PoPy
1.0.3
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  • Principles of Pharmacokinetics
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    • Script File Formats
      • Fit Script
      • Gen Script
      • Sim Script
      • Tut Script
      • Comp Script
      • MFit Script
        • Main Sections of a MFit Script
        • Full Structure of a MFit Script
      • MGen Script
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      • MTut Script
      • MComp Script
      • Grph Script
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      • N2PDat Script
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    • Script File Sections
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    • PoPy Quick Reference Guide
  • Appendices
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MFit Script¶

Fits a PK/PD model to multiple data sets. A multi population version of Fit Script.

A MFit Script can be created by a MTut Script in a similar fashion to how a Fit Script can be created by a Tut Script.

Main Sections of a MFit Script¶

  • METHOD_OPTIONS
  • PARALLEL
  • DESCRIPTION
  • FILE_PATHS
  • DATA_FIELDS
  • PREPROCESS
  • EFFECTS
  • MODEL_PARAMS
  • STATES
  • DERIVATIVES
  • PREDICTIONS
  • ODE_SOLVER
  • FIT_METHODS
  • COVARIANCE

Full Structure of a MFit Script¶

  • METHOD_OPTIONS
    • py_module
    • rand_seed
    • float_format
  • PARALLEL
    • SINGLE
    • MPI_WORKERS
      • n_workers
  • DESCRIPTION
    • name
    • title
    • author
    • abstract
    • keywords
  • FILE_PATHS
    • input_data_files_glob
    • output_folder
    • temp_folder
    • log_folder
    • output_file_ext
    • output_iteration_results
    • numerical_file_sort_flag
  • DATA_FIELDS
    • type_field
    • id_field
    • time_field
  • PREPROCESS
  • EFFECTS
  • MODEL_PARAMS
  • STATES
  • DERIVATIVES
  • PREDICTIONS
  • ODE_SOLVER
    • NO_SOLVER
    • ANALYTIC
      • use_supersections
      • use_sens
    • SCIPY_ODEINT
      • atol
      • rtol
      • max_nsteps
      • use_supersections
      • use_jacobian
      • use_sens
      • use_tcrit
    • CPPODE
      • atol
      • rtol
      • max_nsteps
      • use_supersections
      • use_sens
  • FIT_METHODS
    • JOE
      • output_timing_flag
      • output_warning_detail_flag
      • max_n_main_iterations
      • CONVERGER
        • NONE
        • OBJ_INC
        • OBJ_SIM
      • recompute_jacobians_flag
      • use_laplacian
      • use_chain
      • use_lm_jac
      • reset_re_flag
    • FOCE
      • output_timing_flag
      • output_warning_detail_flag
      • max_n_main_iterations
      • CONVERGER
        • NONE
        • OBJ_INC
        • OBJ_SIM
      • recompute_jacobians_flag
      • use_laplacian
      • use_chain
      • use_central_diffs
      • use_lm_jac
      • reset_re_flag
      • central_diff_switch_flag
  • COVARIANCE
    • NO_COVARIANCE
    • SANDWICH
      • var_covariance_flag
      • inv_hessian_flag
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