PoPy
1.0.3
  • Getting Started Guide
  • Principles of Pharmacokinetics
  • Population Models in PoPy
  • PoPy Example Models
  • PoPy for Nonmem Users
  • PoPy Reference Guide
    • Open a PoPy Command Prompt
    • PoPy Activation
    • Configure PoPy
    • PoPy Website
    • Validate PoPy
    • Command Line Tools
    • Script File Formats
      • Fit Script
      • Gen Script
      • Sim Script
      • Tut Script
      • Comp Script
      • MFit Script
      • MGen Script
      • MSim Script
        • Main Sections of a MSim Script
        • Full Structure of a MSim Script
      • MTut Script
      • MComp Script
      • Grph Script
      • Vpc Script
      • FitSum Script
      • GenSum Script
      • TutSum Script
      • N2PDat Script
      • P2NDat Script
    • Script File Sections
    • Script File Elements
    • Script File Outputs
    • PoPy Quick Reference Guide
  • Appendices
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MSim Script¶

Generates multiple simulations of PK/PD curves from given a PopPK/PD model and an input data set.

An MSim Script often outputs a Vpc Script, which generates a VPC plot from the multiple population simulations.

See Visual Predictive Check for Two Compartment PopPK Model for a working example.

Main Sections of a MSim Script¶

  • METHOD_OPTIONS
  • PARALLEL
  • DESCRIPTION
  • FILE_PATHS
  • DATA_FIELDS
  • PREPROCESS
  • EFFECTS
  • MODEL_PARAMS
  • STATES
  • DERIVATIVES
  • PREDICTIONS
  • ODE_SOLVER
  • OUTPUT_OPTIONS
  • OUTPUT_SCRIPTS

Full Structure of a MSim Script¶

  • METHOD_OPTIONS
    • py_module
    • rand_seed
    • float_format
  • PARALLEL
    • SINGLE
    • MPI_WORKERS
      • n_workers
  • DESCRIPTION
    • name
    • title
    • author
    • abstract
    • keywords
  • FILE_PATHS
    • input_data_file
    • output_folder
    • temp_folder
    • log_folder
    • input_solution_file
  • DATA_FIELDS
    • type_field
    • id_field
    • time_field
  • PREPROCESS
  • EFFECTS
  • MODEL_PARAMS
  • STATES
  • DERIVATIVES
  • PREDICTIONS
  • ODE_SOLVER
    • NO_SOLVER
    • ANALYTIC
      • use_supersections
      • use_sens
    • SCIPY_ODEINT
      • atol
      • rtol
      • max_nsteps
      • use_supersections
      • use_jacobian
      • use_sens
      • use_tcrit
    • CPPODE
      • atol
      • rtol
      • max_nsteps
      • use_supersections
      • use_sens
  • OUTPUT_OPTIONS
    • sim_time_step
    • n_pop_samples
  • OUTPUT_SCRIPTS
    • VPC
      • output_mode
      • vpc_list
      • y_var_src_list
      • y_var_list
      • y_var_label_list
      • x_var
      • split_field
      • split_value
      • share_axes
      • y_scale
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