popy
1.3.1
  • Preliminaries
  • Operating Instructions
  • Simulating A Single Individual
  • Simulating A Population Of Individuals
  • Estimating Population Parameters
  • Working With Many Populations
  • PoPy for Nonmem Users
  • PoPy Reference Guide
    • PoPy Quick Reference Guide
    • Command Line Tools
    • Script File Formats
      • Fit Script
      • Gen Script
      • Sim Script
      • Tut Script
      • Comp Script
      • MFit Script
      • MGen Script
      • MSim Script
      • MTut Script
      • MComp Script
      • Grph Script
      • Vpc Script
        • Full Structure of a VPC Script
      • FitSum Script
      • GenSum Script
      • TutSum Script
    • Script File Sections
    • Script File Elements
    • Script File Outputs
    • Glossary
    • HTML Summary Links
    • Release Notes
    • Notepad++
    • Validation Examples
    • Troubleshooting
    • Bibliography
popy
  • PoPy Reference Guide
  • Script File Formats
  • Vpc Script
  • View page source

Vpc Script

Creates VPC plots. The visual predictive check is designed to plot a population of PK/PD curves on one graph.

A Vpc Script is usually created as a child script of a MSim Script.

See Visual Predictive Check for Simple PopPK Model and builtin_msim_example for working examples.

Full Structure of a VPC Script

  • METHOD_OPTIONS
    • py_module
    • using_preprocessed_input
  • PARALLEL
    • SINGLE
      • progress_bar_length
    • MPI_WORKERS
      • n_workers
      • cpu_load
      • progress_bar_length
  • FILE_PATHS
    • output_folder
    • temp_folder
    • log_folder
    • output_file_ext
    • solutions
  • PREPROCESS
  • DATA_FIELDS
    • type_field
    • id_field
    • time_field
  • OUTPUT_GRAPHS
    • COMB_QUANT_SIM_VPC
      • output_subdir
      • graph_title
      • x_axis_label
      • x_var
      • x_scale
      • y_axis_label_list
      • y_var_src_list
      • y_var_list
      • y_var_label_list
      • y_var_colour_list
      • y_scale_list
      • bin_indexer
        • EQUAL_SPACE
          • n_bins
        • UNEQUAL_SPACE
          • bin_edge_list
        • K_MEANS
          • n_bins
          • init_method
        • POP_INDEX
      • quantile_list
      • min_bin_count
      • options_list
      • conf_interval_prop
      • y_var_norm_list
      • norm_method
      • split_field
      • export_stats
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