Language: en

METHOD_OPTIONS¶

method options for plt_grph

Example:-

METHOD_OPTIONS:
    py_module: grph

py_module¶

Type: one_of(grph)

Python module required to process this script file

Example:-

py_module: grph

PARALLEL¶

Type: one_of_record

one of many possible servers

Example:-

PARALLEL:
    SINGLE: {}

SINGLE¶

Type: dict_record

single process server spec.

Example:-

SINGLE: {}

MPI_WORKERS¶

Type: dict_record

MPI local server spec.

Example:-

MPI_WORKERS:
    n_workers: auto
    cpu_load: 1.0

n_workers¶

Type: int / auto

Number of workers to use on this machine, defaults to number of processors, but could be more or fewer.

Example:-

n_workers: auto

cpu_load¶

Type: float

Desired load on CPU as a decimal greater than 0.0 (0%) and less than or equal to 1.0 (100%)

Example:-

cpu_load: 1.0

FILE_PATHS¶

Type: dict_record

file paths

Example:-

FILE_PATHS:
    output_folder: auto
    log_folder: auto
    output_file_ext: ['svg']
    delete_old_files_flag: False
    solutions:
        initial_fit_ipred: sol0\solution.pyml
        final_fit_ipred: solN\solution.pyml

output_folder¶

Type: output_folder / auto

Output folder - results of computation stored here

Example:-

output_folder: auto

log_folder¶

Type: output_folder / auto

Log folder - log files stored here

Example:-

log_folder: auto

output_file_ext¶

Type: list_of(pdf,png,svg)

Output file extension - determines graphical output file format.

Example:-

output_file_ext: ['svg']

delete_old_files_flag¶

Type: bool

Option to delete any existing files before running.

Example:-

delete_old_files_flag: False

solutions¶

Type: dict

Solutions to compare

Example:-

solutions:
    initial_fit_ipred: sol0\solution.pyml
    final_fit_ipred: solN\solution.pyml

DATA_FIELDS¶

Type: dict_record

data fields for popy.dat.fields object

Example:-

DATA_FIELDS:
    type_field: TYPE
    id_field: ID
    time_field: TIME

type_field¶

Type: str

Field name in data file that contains row type info, e.g. obs/dose etc

Example:-

type_field: TYPE

id_field¶

Type: str

Field name in data file that contains identity string for each data row e.g. obs/dose etc

Example:-

id_field: ID

time_field¶

Type: str

Field name in data file that contains time or event for each data row

Example:-

time_field: TIME

OUTPUT_GRAPHS¶

Type: list_record

List of graphs to output.

Example:-

OUTPUT_GRAPHS:
    - SPAG_GRPH:
        output_subdir: none
        graph_title: My rather excellent graph
        x_axis_label: TIME
        x_var: TIME
        x_scale: linear
        y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']
        y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']
        y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']
        y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']
        y_var_colour_list: ['b', 'g']
        y_var_symbol_list: ['-', '-']
        y_scale_list: ['linear', 'log']
        options_list: ['legend', 'grid', 'dose_lines']

    - COMB_SPAG_GRPH:
        output_subdir: none
        graph_title: My rather excellent graph
        x_axis_label: TIME
        x_var: TIME
        x_scale: linear
        y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']
        y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']
        y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']
        y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']
        y_var_colour_list: ['b', 'g']
        y_var_symbol_list: ['-', '-']
        y_scale_list: ['linear', 'log']
        options_list: ['legend', 'grid', 'dose_lines']

    - SCATTER_GRPH:
        output_subdir: none
        graph_title: My rather excellent graph
        x_axis_label: TIME
        x_var_src: observed_data
        x_var: TIME
        x_scale: linear
        y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']
        y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']
        y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']
        y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']
        y_var_colour_list: ['b', 'g']
        y_var_symbol_list: ['-', '-']
        y_scale_list: ['linear', 'log']
        options_list: ['legend', 'grid', 'dose_lines']
        dot_size: 12

    - IRES_VS_X_GRPH:
        output_subdir: none
        graph_title: My rather excellent graph
        x_axis_label: TIME
        x_var_src: observed_data
        x_var: TIME
        x_scale: linear
        y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']
        y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']
        y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']
        y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']
        y_var_colour_list: ['b', 'g']
        y_var_symbol_list: ['-', '-']
        y_scale_list: ['linear', 'log']
        options_list: ['legend', 'grid', 'dose_lines']
        dot_size: 12

    - IWRES_VS_X_GRPH:
        output_subdir: none
        graph_title: My rather excellent graph
        x_axis_label: TIME
        x_var_src: observed_data
        x_var: TIME
        x_scale: linear
        y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']
        y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']
        y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']
        y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']
        y_var_colour_list: ['b', 'g']
        y_var_symbol_list: ['-', '-']
        y_scale_list: ['linear', 'log']
        options_list: ['legend', 'grid', 'dose_lines']
        dot_size: 12

    - WRES_VS_X_GRPH:
        output_subdir: none
        graph_title: My rather excellent graph
        x_axis_label: TIME
        x_var_src: observed_data
        x_var: TIME
        x_scale: linear
        y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']
        y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']
        y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']
        y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']
        y_var_colour_list: ['b', 'g']
        y_var_symbol_list: ['-', '-']
        y_scale_list: ['linear', 'log']
        options_list: ['legend', 'grid', 'dose_lines']
        dot_size: 12

SPAG_GRPH¶

Type: dict_record

Plot data for all individuals on separate graphs.

Example:-

SPAG_GRPH:
    output_subdir: none
    graph_title: My rather excellent graph
    x_axis_label: TIME
    x_var: TIME
    x_scale: linear
    y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']
    y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']
    y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']
    y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']
    y_var_colour_list: ['b', 'g']
    y_var_symbol_list: ['-', '-']
    y_scale_list: ['linear', 'log']
    options_list: ['legend', 'grid', 'dose_lines']

output_subdir¶

Type: output_folder

Destination subdirectory for these plots.

Example:-

output_subdir: none

graph_title¶

Type: str

Title of graph.

Example:-

graph_title: My rather excellent graph

x_axis_label¶

Type: str

x axis label text

Example:-

x_axis_label: TIME

x_var¶

Type: str

x axis variable name.

Example:-

x_var: TIME

x_scale¶

Type: one_of(linear,log)

x axis scale - can be either ‘linear’ or ‘log’.

Example:-

x_scale: linear

y_axis_label_list¶

Type: list(str)

List of labels for y variables that appear on axes.

Example:-

y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']

y_var_src_list¶

Type: list(str)

Names of the solution folders that contain the predictions to be plotted

Example:-

y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']

y_var_list¶

Type: list(str)

List of y variable names (i.e. columns in the predictions table) to be plotted on graph.

Example:-

y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']

y_var_label_list¶

Type: list(str)

List of y variable labels which will appear in the legend as <y_var_label> (<y_var_src>).

Example:-

y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']

y_var_colour_list¶

Type: list(str)

List of colours for y variable plot lines.

Example:-

y_var_colour_list: ['b', 'g']

y_var_symbol_list¶

Type: list(str)

List of plot line styles for y variable plot lines.

Example:-

y_var_symbol_list: ['-', '-']

y_scale_list¶

Type: list(str)

List of scales (linear or log) for multiple y axes.

Example:-

y_scale_list: ['linear', 'log']

options_list¶

Type: list_of(legend,legend_above,grid,dose_lines,share_axes,sim_xy,square,45degree_line,linreg_line,gaussreg_line)

List of visual options to apply to individual plots.

Example:-

options_list: ['legend', 'grid', 'dose_lines']

COMB_SPAG_GRPH¶

Type: dict_record

Plot data for all individuals one one graph.

Example:-

COMB_SPAG_GRPH:
    output_subdir: none
    graph_title: My rather excellent graph
    x_axis_label: TIME
    x_var: TIME
    x_scale: linear
    y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']
    y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']
    y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']
    y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']
    y_var_colour_list: ['b', 'g']
    y_var_symbol_list: ['-', '-']
    y_scale_list: ['linear', 'log']
    options_list: ['legend', 'grid', 'dose_lines']

output_subdir¶

Type: output_folder

Destination subdirectory for these plots.

Example:-

output_subdir: none

graph_title¶

Type: str

Title of graph.

Example:-

graph_title: My rather excellent graph

x_axis_label¶

Type: str

x axis label text

Example:-

x_axis_label: TIME

x_var¶

Type: str

x axis variable name.

Example:-

x_var: TIME

x_scale¶

Type: one_of(linear,log)

x axis scale - can be either ‘linear’ or ‘log’.

Example:-

x_scale: linear

y_axis_label_list¶

Type: list(str)

List of labels for y variables that appear on axes.

Example:-

y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']

y_var_src_list¶

Type: list(str)

Names of the solution folders that contain the predictions to be plotted

Example:-

y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']

y_var_list¶

Type: list(str)

List of y variable names (i.e. columns in the predictions table) to be plotted on graph.

Example:-

y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']

y_var_label_list¶

Type: list(str)

List of y variable labels which will appear in the legend as <y_var_label> (<y_var_src>).

Example:-

y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']

y_var_colour_list¶

Type: list(str)

List of colours for y variable plot lines.

Example:-

y_var_colour_list: ['b', 'g']

y_var_symbol_list¶

Type: list(str)

List of plot line styles for y variable plot lines.

Example:-

y_var_symbol_list: ['-', '-']

y_scale_list¶

Type: list(str)

List of scales (linear or log) for multiple y axes.

Example:-

y_scale_list: ['linear', 'log']

options_list¶

Type: list_of(legend,legend_above,grid,dose_lines,share_axes,sim_xy,square,45degree_line,linreg_line,gaussreg_line)

List of visual options to apply to individual plots.

Example:-

options_list: ['legend', 'grid', 'dose_lines']

SCATTER_GRPH¶

Type: dict_record

Scatter plot for all individuals on a single graph.

Example:-

SCATTER_GRPH:
    output_subdir: none
    graph_title: My rather excellent graph
    x_axis_label: TIME
    x_var_src: observed_data
    x_var: TIME
    x_scale: linear
    y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']
    y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']
    y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']
    y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']
    y_var_colour_list: ['b', 'g']
    y_var_symbol_list: ['-', '-']
    y_scale_list: ['linear', 'log']
    options_list: ['legend', 'grid', 'dose_lines']
    dot_size: 12

output_subdir¶

Type: output_folder

Destination subdirectory for these plots.

Example:-

output_subdir: none

graph_title¶

Type: str

Title of graph.

Example:-

graph_title: My rather excellent graph

x_axis_label¶

Type: str

x axis label text

Example:-

x_axis_label: TIME

x_var_src¶

Type: str

Name of the folder containing the solution.pyml and predictions.csv for the data on the x-axis.

Example:-

x_var_src: observed_data

x_var¶

Type: str

x axis variable name.

Example:-

x_var: TIME

x_scale¶

Type: one_of(linear,log)

x axis scale - can be either ‘linear’ or ‘log’.

Example:-

x_scale: linear

y_axis_label_list¶

Type: list(str)

List of labels for y variables that appear on axes.

Example:-

y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']

y_var_src_list¶

Type: list(str)

Names of the solution folders that contain the predictions to be plotted

Example:-

y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']

y_var_list¶

Type: list(str)

List of y variable names (i.e. columns in the predictions table) to be plotted on graph.

Example:-

y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']

y_var_label_list¶

Type: list(str)

List of y variable labels which will appear in the legend as <y_var_label> (<y_var_src>).

Example:-

y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']

y_var_colour_list¶

Type: list(str)

List of colours for y variable plot lines.

Example:-

y_var_colour_list: ['b', 'g']

y_var_symbol_list¶

Type: list(str)

List of plot line styles for y variable plot lines.

Example:-

y_var_symbol_list: ['-', '-']

y_scale_list¶

Type: list(str)

List of scales (linear or log) for multiple y axes.

Example:-

y_scale_list: ['linear', 'log']

options_list¶

Type: list_of(legend,legend_above,grid,dose_lines,share_axes,sim_xy,square,45degree_line,linreg_line,gaussreg_line)

List of visual options to apply to individual plots.

Example:-

options_list: ['legend', 'grid', 'dose_lines']

dot_size¶

Type: int

Size of dots appearing in scatter plots

Example:-

dot_size: 12

IRES_VS_X_GRPH¶

Type: dict_record

Scatter plot for all individuals on a single graph.

Example:-

IRES_VS_X_GRPH:
    output_subdir: none
    graph_title: My rather excellent graph
    x_axis_label: TIME
    x_var_src: observed_data
    x_var: TIME
    x_scale: linear
    y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']
    y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']
    y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']
    y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']
    y_var_colour_list: ['b', 'g']
    y_var_symbol_list: ['-', '-']
    y_scale_list: ['linear', 'log']
    options_list: ['legend', 'grid', 'dose_lines']
    dot_size: 12

output_subdir¶

Type: output_folder

Destination subdirectory for these plots.

Example:-

output_subdir: none

graph_title¶

Type: str

Title of graph.

Example:-

graph_title: My rather excellent graph

x_axis_label¶

Type: str

x axis label text

Example:-

x_axis_label: TIME

x_var_src¶

Type: str

Name of the folder containing the solution.pyml and predictions.csv for the data on the x-axis.

Example:-

x_var_src: observed_data

x_var¶

Type: str

x axis variable name.

Example:-

x_var: TIME

x_scale¶

Type: one_of(linear,log)

x axis scale - can be either ‘linear’ or ‘log’.

Example:-

x_scale: linear

y_axis_label_list¶

Type: list(str)

List of labels for y variables that appear on axes.

Example:-

y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']

y_var_src_list¶

Type: list(str)

Names of the solution folders that contain the predictions to be plotted

Example:-

y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']

y_var_list¶

Type: list(str)

List of y variable names (i.e. columns in the predictions table) to be plotted on graph.

Example:-

y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']

y_var_label_list¶

Type: list(str)

List of y variable labels which will appear in the legend as <y_var_label> (<y_var_src>).

Example:-

y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']

y_var_colour_list¶

Type: list(str)

List of colours for y variable plot lines.

Example:-

y_var_colour_list: ['b', 'g']

y_var_symbol_list¶

Type: list(str)

List of plot line styles for y variable plot lines.

Example:-

y_var_symbol_list: ['-', '-']

y_scale_list¶

Type: list(str)

List of scales (linear or log) for multiple y axes.

Example:-

y_scale_list: ['linear', 'log']

options_list¶

Type: list_of(legend,legend_above,grid,dose_lines,share_axes,sim_xy,square,45degree_line,linreg_line,gaussreg_line)

List of visual options to apply to individual plots.

Example:-

options_list: ['legend', 'grid', 'dose_lines']

dot_size¶

Type: int

Size of dots appearing in scatter plots

Example:-

dot_size: 12

IWRES_VS_X_GRPH¶

Type: dict_record

Scatter plot for all individuals on a single graph.

Example:-

IWRES_VS_X_GRPH:
    output_subdir: none
    graph_title: My rather excellent graph
    x_axis_label: TIME
    x_var_src: observed_data
    x_var: TIME
    x_scale: linear
    y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']
    y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']
    y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']
    y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']
    y_var_colour_list: ['b', 'g']
    y_var_symbol_list: ['-', '-']
    y_scale_list: ['linear', 'log']
    options_list: ['legend', 'grid', 'dose_lines']
    dot_size: 12

output_subdir¶

Type: output_folder

Destination subdirectory for these plots.

Example:-

output_subdir: none

graph_title¶

Type: str

Title of graph.

Example:-

graph_title: My rather excellent graph

x_axis_label¶

Type: str

x axis label text

Example:-

x_axis_label: TIME

x_var_src¶

Type: str

Name of the folder containing the solution.pyml and predictions.csv for the data on the x-axis.

Example:-

x_var_src: observed_data

x_var¶

Type: str

x axis variable name.

Example:-

x_var: TIME

x_scale¶

Type: one_of(linear,log)

x axis scale - can be either ‘linear’ or ‘log’.

Example:-

x_scale: linear

y_axis_label_list¶

Type: list(str)

List of labels for y variables that appear on axes.

Example:-

y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']

y_var_src_list¶

Type: list(str)

Names of the solution folders that contain the predictions to be plotted

Example:-

y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']

y_var_list¶

Type: list(str)

List of y variable names (i.e. columns in the predictions table) to be plotted on graph.

Example:-

y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']

y_var_label_list¶

Type: list(str)

List of y variable labels which will appear in the legend as <y_var_label> (<y_var_src>).

Example:-

y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']

y_var_colour_list¶

Type: list(str)

List of colours for y variable plot lines.

Example:-

y_var_colour_list: ['b', 'g']

y_var_symbol_list¶

Type: list(str)

List of plot line styles for y variable plot lines.

Example:-

y_var_symbol_list: ['-', '-']

y_scale_list¶

Type: list(str)

List of scales (linear or log) for multiple y axes.

Example:-

y_scale_list: ['linear', 'log']

options_list¶

Type: list_of(legend,legend_above,grid,dose_lines,share_axes,sim_xy,square,45degree_line,linreg_line,gaussreg_line)

List of visual options to apply to individual plots.

Example:-

options_list: ['legend', 'grid', 'dose_lines']

dot_size¶

Type: int

Size of dots appearing in scatter plots

Example:-

dot_size: 12

WRES_VS_X_GRPH¶

Type: dict_record

Scatter plot for all individuals on a single graph.

Example:-

WRES_VS_X_GRPH:
    output_subdir: none
    graph_title: My rather excellent graph
    x_axis_label: TIME
    x_var_src: observed_data
    x_var: TIME
    x_scale: linear
    y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']
    y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']
    y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']
    y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']
    y_var_colour_list: ['b', 'g']
    y_var_symbol_list: ['-', '-']
    y_scale_list: ['linear', 'log']
    options_list: ['legend', 'grid', 'dose_lines']
    dot_size: 12

output_subdir¶

Type: output_folder

Destination subdirectory for these plots.

Example:-

output_subdir: none

graph_title¶

Type: str

Title of graph.

Example:-

graph_title: My rather excellent graph

x_axis_label¶

Type: str

x axis label text

Example:-

x_axis_label: TIME

x_var_src¶

Type: str

Name of the folder containing the solution.pyml and predictions.csv for the data on the x-axis.

Example:-

x_var_src: observed_data

x_var¶

Type: str

x axis variable name.

Example:-

x_var: TIME

x_scale¶

Type: one_of(linear,log)

x axis scale - can be either ‘linear’ or ‘log’.

Example:-

x_scale: linear

y_axis_label_list¶

Type: list(str)

List of labels for y variables that appear on axes.

Example:-

y_axis_label_list: ['Drug concentration in plasma', 'Bio-marker concentration in plasma']

y_var_src_list¶

Type: list(str)

Names of the solution folders that contain the predictions to be plotted

Example:-

y_var_src_list: ['observed_data', 'final_fit_ppred', 'final_fit_ipred']

y_var_list¶

Type: list(str)

List of y variable names (i.e. columns in the predictions table) to be plotted on graph.

Example:-

y_var_list: ['DV_CENTRAL', 'DV_CENTRAL', 'DV_CENTRAL']

y_var_label_list¶

Type: list(str)

List of y variable labels which will appear in the legend as <y_var_label> (<y_var_src>).

Example:-

y_var_label_list: ['Drug conc. (units)', 'Drug conc. (units)', 'Drug conc. (units)']

y_var_colour_list¶

Type: list(str)

List of colours for y variable plot lines.

Example:-

y_var_colour_list: ['b', 'g']

y_var_symbol_list¶

Type: list(str)

List of plot line styles for y variable plot lines.

Example:-

y_var_symbol_list: ['-', '-']

y_scale_list¶

Type: list(str)

List of scales (linear or log) for multiple y axes.

Example:-

y_scale_list: ['linear', 'log']

options_list¶

Type: list_of(legend,legend_above,grid,dose_lines,share_axes,sim_xy,square,45degree_line,linreg_line,gaussreg_line)

List of visual options to apply to individual plots.

Example:-

options_list: ['legend', 'grid', 'dose_lines']

dot_size¶

Type: int

Size of dots appearing in scatter plots

Example:-

dot_size: 12

Grph Script

Vpc Script

Documentation

METHOD_OPTIONS¶

py_module¶

PARALLEL¶

SINGLE¶

MPI_WORKERS¶

n_workers¶

cpu_load¶

FILE_PATHS¶

output_folder¶

log_folder¶

output_file_ext¶

delete_old_files_flag¶

solutions¶

DATA_FIELDS¶

type_field¶

id_field¶

time_field¶

OUTPUT_GRAPHS¶

SPAG_GRPH¶

output_subdir¶

graph_title¶

x_axis_label¶

x_var¶

x_scale¶

y_axis_label_list¶

y_var_src_list¶

y_var_list¶

y_var_label_list¶

y_var_colour_list¶

y_var_symbol_list¶

y_scale_list¶

options_list¶

COMB_SPAG_GRPH¶

output_subdir¶

graph_title¶

x_axis_label¶

x_var¶

x_scale¶

y_axis_label_list¶

y_var_src_list¶

y_var_list¶

y_var_label_list¶

y_var_colour_list¶

y_var_symbol_list¶

y_scale_list¶

options_list¶

SCATTER_GRPH¶

output_subdir¶

graph_title¶

x_axis_label¶

x_var_src¶

x_var¶

x_scale¶

y_axis_label_list¶

y_var_src_list¶

y_var_list¶

y_var_label_list¶

y_var_colour_list¶

y_var_symbol_list¶

y_scale_list¶

options_list¶

dot_size¶

IRES_VS_X_GRPH¶

output_subdir¶

graph_title¶

x_axis_label¶

x_var_src¶

x_var¶

x_scale¶

y_axis_label_list¶

y_var_src_list¶

y_var_list¶

y_var_label_list¶

y_var_colour_list¶

y_var_symbol_list¶

y_scale_list¶

options_list¶

dot_size¶

IWRES_VS_X_GRPH¶