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Documentation

Language: en

1.2.0
1.2.1
Documentation version: 1.2.2

Sim Script¶

Running PoPy on a Sim Script generates dense time point simulations of PK/PD curves given a PopPK/PD model and an input data set.

Main Sections of a Sim Script¶

METHOD_OPTIONS
PARALLEL
DESCRIPTION
FILE_PATHS
DATA_FIELDS
PREPROCESS
STATES
DERIVATIVES
PREDICTIONS
POSTPROCESS
ODE_SOLVER
OUTPUT_OPTIONS
OUTPUT_SCRIPTS

Full Structure of a Sim Script¶

METHOD_OPTIONS
PARALLEL
- SINGLE
- MPI_WORKERS
  - n_workers
  - cpu_load
DESCRIPTION
- name
- title
- author
- abstract
- keywords
FILE_PATHS
DATA_FIELDS
PREPROCESS
STATES
DERIVATIVES
PREDICTIONS
POSTPROCESS
ODE_SOLVER
- NO_SOLVER
- ANALYTIC
  - use_supersections
  - use_sens
- SCIPY_ODEINT
  - atol
  - rtol
  - max_nsteps
  - use_supersections
  - use_jacobian
  - use_sens
  - use_tcrit
- CPPLSODA
  - atol
  - rtol
  - max_nsteps
  - use_supersections
  - use_sens
  - hmin
OUTPUT_OPTIONS
- sim_time_step
OUTPUT_SCRIPTS
- GRPH
  - output_mode
  - grph_list
- TABLE
  - output_mode
  - tables_list
    - TABLE

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Sim Script
- Main Sections of a Sim Script
- Full Structure of a Sim Script

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PoPy 1.2.2 documentation
- PoPy Reference Guide
  - Script File Formats
    - Sim Script

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