METHOD_OPTIONS
Type: dict_record
method options for mcomp_script
Example:-
METHOD_OPTIONS:
py_module: mcomp
rand_seed: 12345
float_format: default
py_module
Type: one_of(mcomp)
Python module required to process this script file
Example:-
py_module: mcomp
rand_seed
Option to set seed to make run result reproducible -e.g. when debugging.
Example:-
rand_seed: 12345
float_format
Type: str
Format string for numerical output
Example:-
float_format: default
DESCRIPTION
Type: dict_record
Description fields for script.
Example:-
DESCRIPTION:
name: my_pkpd_model
title: My PKPD model
author: My Name
abstract: |
Abstract describing the model
keywords: ['pkpd']
name
Type: str
Unique name used to distinguish script
Example:-
name: my_pkpd_model
title
Type: str
A longer text string that could serve as a title
Example:-
title: My PKPD model
abstract
Type: verbatim
Abstract paragraph describing model
Example:-
abstract: |
Abstract describing the model
keywords
Type: list
Keywords list used to categorise models.
Example:-
keywords: ['pkpd']
FILE_PATHS
Type: dict_record
File paths for mcomp script
Example:-
FILE_PATHS:
output_folder: auto
temp_folder: auto
log_folder: auto
output_file_ext: ['svg']
mgen_script_path: auto
mgen_output_folder: auto
mfit_script_path: auto
mfit_output_folder: auto
output_folder
Type: output_folder / auto
Output folder - results of computation stored here
Example:-
output_folder: auto
temp_folder
Type: output_folder / auto
Temp folder - temporary files stored here
Example:-
temp_folder: auto
log_folder
Type: output_folder / auto
Log folder - log files stored here
Example:-
log_folder: auto
output_file_ext
Type: list_of(pdf,png,svg)
Output file extension - determines graphical output file format.
Example:-
output_file_ext: ['svg']
mgen_script_path
Type: input_file / auto
Path to mgen_script.
Example:-
mgen_script_path: auto
mgen_output_folder
Type: output_folder / auto
mgen_script output folder.
Example:-
mgen_output_folder: auto
mfit_script_path
Type: input_file / auto
Path to mfit_script.
Example:-
mfit_script_path: auto
mfit_output_folder
Type: output_folder / auto
mfit_script output folder.
Example:-
mfit_output_folder: auto
MCOMP_OPTIONS
Type: dict_record
Options for mcomp script
Example:-
MCOMP_OPTIONS:
dot_size: 12
dot_size
Type: int
Size of dots appearing in scatter plots
Example:-
dot_size: 12