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Depot + One compartment PK with BLQ

[Generated automatically as a Tutorial summary]

Model Description

Name:

blq_pk

Title:

Depot + One compartment PK with BLQ

Author:

PoPy for PK/PD

Abstract:

Depot One Comp PK model, with BLQ (below level of quantification) observations.
Keywords:

tutorial; pk; advan4; dep_two_cmp; blq

Input Script:

blq_pk_tut.pyml

Diagram:

Comparison

True objective value

-781.3723

Final fitted objective value

-786.5417

Compare Main f[X]

Name

Initial

Fitted

True

Abs. Error

Prop. Error

f[KA]

1

0.206

0.2

6.03e-03

3.02%

f[CL]

1

2…

2

1.29e-03

0.06%

f[V1]

20

51

50

9.53e-01

1.91%

Compare Noise f[X]

Name

Initial

Fitted

True

Abs. Error

Prop. Error

f[PNOISE]

0.1

0.147

0.15

3.06e-03

2.04%

Compare Variance f[X]

Name

Initial

Fitted

True

Abs. Error

Prop. Error

f[KA_isv]

0.05

0.0532

0.1

4.68e-02

46.84%

f[KA_isv;CL_isv]

0.01

0.0111

0.02

8.87e-03

44.34%

f[KA_isv;V1_isv]

0.01

-0.0286

0.01

3.86e-02

386.23%

f[CL_isv;KA_isv]

0.01

0.0111

0.02

8.87e-03

44.34%

f[CL_isv]

0.05

0.0289

0.03

1.11e-03

3.70%

f[CL_isv;V1_isv]

0.01

0.0239

0.02

3.94e-03

19.69%

f[V1_isv;KA_isv]

0.01

-0.0286

0.01

3.86e-02

386.23%

f[V1_isv;CL_isv]

0.01

0.0239

0.02

3.94e-03

19.69%

f[V1_isv]

0.05

0.0642

0.09

2.58e-02

28.72%

Outputs

Fitted f[X] values (after fitting)

f[KA] = 0.2060
f[CL] = 1.9987
f[V1] = 50.9527
f[KA_isv,CL_isv,V1_isv] = [
    [ 0.0532, 0.0111, -0.0286 ],
    [ 0.0111, 0.0289, 0.0239 ],
    [ -0.0286, 0.0239, 0.0642 ],
]
f[PNOISE] = 0.1469
f[ANOISE] = 0.0100

Generated data .csv file

Synthetic Data:

synthetic_data.csv

Gen and Fit Summaries

Inputs

True f[X] values (for simulation)

f[KA] = 0.2000
f[CL] = 2.0000
f[V1] = 50.0000
f[KA_isv,CL_isv,V1_isv] = [
    [ 0.1000, 0.0200, 0.0100 ],
    [ 0.0200, 0.0300, 0.0200 ],
    [ 0.0100, 0.0200, 0.0900 ],
]
f[PNOISE] = 0.1500
f[ANOISE] = 0.0100

Starting f[X] values (before fitting)

f[KA] = 1.0000
f[CL] = 1.0000
f[V1] = 20.0000
f[KA_isv,CL_isv,V1_isv] = [
    [ 0.0500, 0.0100, 0.0100 ],
    [ 0.0100, 0.0500, 0.0100 ],
    [ 0.0100, 0.0100, 0.0500 ],
]
f[PNOISE] = 0.1000
f[ANOISE] = 0.0100
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